16S RNA

Here you can browse through the computed characteristics of 16S rRNA. Each point represents an average or a sum (in the case of functionalities) for a 10-mer 16S rRNA stretches. The measurement was calculated in a maximally overlapping manner. You can view any part of the plot by selecting and cliking a display range on the upper green strip with 16S rRNA numbering. The green strip represents the entire 16S rRNA sequence. The blue scales denote the observed region. You can use the numerical fields to precisely set the displayed region. You can also inspect the exact values of the measures at different positions upon moving your mouse in the plots field. For details about the displayed characteristics see About.
Displayed range:
Functional sites: Mutations important for ribosomal functioning and antibiotics resistance, Bridges (Intersubunit bridges), ABS (Antibiotics Binding Sites), APE (A, P or E ribosomal sites)
RMSF: Root Mean Square Frequency
H-bonds: Number of hydrogen bonds
SASA: Solvent Accessible Surface Area

For details about data please consult publication.